International Centre for Genetic Engineering and Biotechnology

Practical Course

"Bioinformatics: Computer Methods in Molecular Biology"

 


 

AREA Science Park - Trieste, ITALY

23 - 28 June 2014

 

PRELIMINARY PROGRAMME

 

 

 MONDAY, 23 June

08:00

Pick-up from Hotel Roma

 

08:30

Course Registration

ICGEB Foyer, W Building

09:15

Welcome Address

ICGEB Seminar Room, "W" Building
Sándor Pongor, (ICGEB, Trieste, Italy)

09:30

Bioinformatics and knowledge representation: theoretical intro to the course

Sándor Pongor  Get Tutorial

10:45

BREAK

 

11:15

The ICGEB computer system, course infrastructure

Informatics Laboratory, E3 Building

Dario Palmisano (ICGEB, Trieste, Italy)

Bioinformatics on the Google Cloud Platform

Roberto Vera (LNCIB, Trieste, Italy)
 Get Tutorial

Introduction to Linux environment

Sanjarbek Hudaiberdiev (ICGEB, Trieste, Italy)
 Get Tutorial

12:30

The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases

Paola Roncaglia, EBI, Hinxton, UK
 Get Tutorial

13:30 LUNCH Cafeteria, Ground Floor, 'C' Building

14:30

The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases

Paola Roncaglia, EBI, Hinxton, UK

17:00

Get-Together Party

ICGEB Foyer, W Building

18:00

BUS TO HOTEL

 

 

TUESDAY, 24 June

08:30

Pick-up from Hotel

 

09:00

The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases

Paola Roncaglia, EBI, Hinxton, UK

11:00

BREAK

 

11:30

The European Bioinformatics Institute (EBI) services: searches, functional genomics and pathway databases

Paola Roncaglia, EBI, Hinxton, UK

13:30

LUNCH

Cafeteria, Ground Floor, 'C' Building

14:30

Sequence analysis, database searching

David Judge, University of Cambridge, UK
 Get Tutorial

18:00

BUS TO HOTEL

 

 

WEDNESDAY, 25 June

08:30

Pick-up from Hotel

 

09:00

Functional genome annotation enabled by cloud computing

Leonardo Marino-Ramirez, NCBI, NIH, Bethesda, MD, US
 Get Tutorial

11:00

BREAK

 

11:30

Next-generation sequencing data analysis using open source software - Quality Control and Sequence Assembly

Leonardo Marino-Ramirez, NCBI, NIH, Bethesda, MD, US

13:30

LUNCH

Cafeteria, Ground Floor, Building C

14:30

Sequence analysis, database searching. (cont.)

David Judge, University of Cambridge, UK

18:00

BUS TO HOTEL

 

 

THURSDAY, 26 June

08:30

Pick-up from Hotel

 

09:00

The National Center for Biotechnology Information (NCBI) services, nucleic acid databases

David Landsman, NCBI, NIH, Bethesda, MD, USA
 Get Tutorial

11:00

BREAK

 

11:30

The National Center for Biotechnology Information (NCBI) services, nucleic acid databases

David Landsman, NCBI, NIH, Bethesda, MD, USA

13:30

LUNCH

Cafeteria, Ground Floor, Building C

14:30

Sequence analysis, database searching. (cont.)

David Judge, University of Cambridge, UK

18:00

BUS TO HOTEL

 

 

FRIDAY, 27 June

08:30

Pick-up from Hotel

 

09:00

Sequence analysis, database searching. (cont.)

David Judge, University of Cambridge, UK

11:00

BREAK

 

11:30

Sequence analysis, database searching. (cont.)

David Judge, University of Cambridge, UK

13:30

LUNCH

Cafeteria, Ground Floor, Building C

14:30

Sequence analysis, database searching. (cont.)

David Judge, University of Cambridge, UK

18:00

BUS TO HOTEL

 

 

SATURDAY, 28 June

08:30

Pick-up from Hotel

 

09:00

Genome computing, phylogeny

Martin Bishop, Cambridge, UK, David Judge  Get Tutorial

10:30

BREAK

 

11:00

Genome computing, phylogeny (cont.)

Martin Bishop, David Judge

13:00

LUNCH

ICGEB premises, ‘W’ Building

14:00

Protein sequence databases, UniProt

Elisabeth Gasteiger , SIB Swiss Institute of Bioinformatics, Geneva, Switzerland
 Get Tutorial

18:00

BUS TO HOTEL

 


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