Protein Classification Benchmark Collection

Protein domain sequence and structure comparison (small model datasests)

SCOP40mini

SCOP95_Superfamily_Family_Filtered

CATH95_Homology_Similarit_Filtered

Protein domain sequence and structure comparisons at various levels of the structural hierarchies

reduced size sets

full size sets

Taxonomic classifications
3PGK_Protein_Kingdom_Phylum 3PGK_DNA_Kingdom_Phylum	COG_Archea_Kingdoms

Functional classifications

COG_Eukaryotes_Prokaryotes